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Metadata&Annotaions
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| Sample matedata |
Sample matedata.xlsx |
467 KB |
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| The chicken reference genome |
The chicken reference genome.fna.gz |
0.99 GB |
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| The chicken reference genome gtf |
The chicken reference genome.gtf.gz |
639 MB |
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Molecular phenotypes
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| Gene expression TMM matrix |
Gene expression TMM matrix.zip |
307 MB |
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| Alternative splicing TMM matrix |
Alternative splicing TMM matrix.zip |
2.79 GB |
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Genotype
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| Genotype for molQTL mapping |
chicken_filted.bed |
5.75 GB |
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| Genotype for molQTL mapping |
chicken_filted.bim |
460 MB |
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| Genotype for molQTL mapping |
chicken_filted.fam |
29.6 KB |
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molQTL
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| Significance level of all genes and their lead variant for cis-eQTL |
Significance level of all genes and their lead variant for cis-eQTL.zip |
22.2 MB |
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| Significance level of all genes and their lead variant for cell type interaction-eQTL.zip |
Significance level of all genes and their lead variant for ci-eQTL.zip |
62.0 MB |
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| Significance level of all genes and their lead variant for cis-sQTL |
Significance level of all genes and their lead variant for cis-sQTL.zip |
17.8 MB |
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| Independent cis-eQTL for each eGene |
Independent cis-eQTL for each eGene.zip |
55.2 MB |
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| Independent cis-eQTL for each sGene |
Independent cis-eQTL for each sGene.zip |
30.0 MB |
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| Fine-mapped credible sets from SuSiE for each eGene |
Fine-mapped credible sets from SuSiE for each eGene.zip |
18.1 MB |
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| Fine-mapped credible sets from SuSiE for each sGene |
Fine-mapped credible sets from SuSiE for each sGene.zip |
9.97 MB |
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| Sex interaction QTL |
Sex_Interaction_QTL.zip |
20.2 MB |
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| Sex straitified QTL |
Sex_Straitified_QTL.zip |
451 GB |
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| Cell type fraction interaction-eQTL |
ci-eQTL.zip |
62.0 MB |
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TWAS
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| TWAS ElasticNet prediction model database |
TWAS ElasticNet prediction model database.zip |
876 MB |
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| Multi-tissue TWAS results of 26 complex traits |
Multi-tissue TWAS results of 26 complex traits.zip |
545 MB |
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